Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
ABCA1O95477 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.26□□□□□ -0.13
ABCA1O95477 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
ABCA1O95477 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 AC005034.1-201ENST00000426657 489 ntBASIC14.26□□□□□ -0.13
ABCA1O95477 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
ABCA1O95477 DUTP2-201ENST00000519164 463 ntBASIC14.26□□□□□ -0.13
ABCA1O95477 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA1O95477 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
ABCA1O95477 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.25□□□□□ -0.13
ABCA1O95477 SPDYE11-202ENST00000450699 704 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 AC074386.1-202ENST00000463561 864 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.25□□□□□ -0.13
ABCA1O95477 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.25□□□□□ -0.13
ABCA1O95477 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 SPDYE9P-201ENST00000570642 692 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 AC099522.2-201ENST00000607001 744 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 SPDYE10P-202ENST00000612005 668 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 SPDYE8P-202ENST00000612377 668 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 AC009093.7-201ENST00000623853 1223 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA1O95477 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
ABCA1O95477 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA1O95477 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.25□□□□□ -0.13
ABCA1O95477 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.25□□□□□ -0.13
ABCA1O95477 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.25□□□□□ -0.13
ABCA1O95477 AC019129.2-201ENST00000609837 1235 ntBASIC14.25□□□□□ -0.13
ABCA1O95477 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA1O95477 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
ABCA1O95477 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
ABCA1O95477 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.25□□□□□ -0.13
ABCA1O95477 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
ABCA1O95477 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 LETM1P2-201ENST00000597330 2178 ntBASIC14.24□□□□□ -0.13
ABCA1O95477 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 MIR661-201ENST00000384842 89 ntBASIC14.24□□□□□ -0.13
ABCA1O95477 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
ABCA1O95477 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.24□□□□□ -0.13
ABCA1O95477 TSPY16P-201ENST00000449843 468 ntBASIC14.24□□□□□ -0.13
ABCA1O95477 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms