Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF40O75150 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF40O75150 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF40O75150 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RNF40O75150 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF40O75150 HNRNPDP1-201ENST00000439535 754 ntBASIC18.39■□□□□ 0.53
RNF40O75150 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF40O75150 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.39■□□□□ 0.53
RNF40O75150 SCARNA2-201ENST00000458748 420 ntBASIC18.39■□□□□ 0.53
RNF40O75150 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF40O75150 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF40O75150 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF40O75150 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF40O75150 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF40O75150 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF40O75150 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
RNF40O75150 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.39■□□□□ 0.53
RNF40O75150 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF40O75150 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF40O75150 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
RNF40O75150 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
RNF40O75150 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
RNF40O75150 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF40O75150 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF40O75150 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.38■□□□□ 0.53
RNF40O75150 TERC-201ENST00000602385 541 ntBASIC18.38■□□□□ 0.53
RNF40O75150 AC009154.2-201ENST00000621177 724 ntBASIC18.38■□□□□ 0.53
RNF40O75150 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RNF40O75150 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF40O75150 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF40O75150 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF40O75150 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 INTS4P1-201ENST00000438455 1935 ntBASIC18.37■□□□□ 0.53
RNF40O75150 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
RNF40O75150 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF40O75150 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 MTCL1P1-201ENST00000446207 792 ntBASIC18.37■□□□□ 0.53
RNF40O75150 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF40O75150 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF40O75150 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 AL138831.2-201ENST00000606564 490 ntBASIC18.37■□□□□ 0.53
RNF40O75150 AC116407.3-201ENST00000623905 1129 ntBASIC18.37■□□□□ 0.53
RNF40O75150 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF40O75150 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 PMS2P7-201ENST00000506558 1336 ntBASIC18.37■□□□□ 0.53
RNF40O75150 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF40O75150 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
RNF40O75150 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF40O75150 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
RNF40O75150 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms