Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 SPDYE22P-201ENST00000582158 798 ntBASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDHGA1Q9Y5H4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDHGA1Q9Y5H4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 OR8S1-201ENST00000310194 1080 ntBASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 AC027307.2-201ENST00000591252 911 ntBASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 AL359881.2-201ENST00000602973 570 ntBASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 AC025048.6-201ENST00000634326 1161 ntBASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDHGA1Q9Y5H4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 AC135050.7-201ENST00000624508 2218 ntBASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 NME2P1-201ENST00000426182 414 ntBASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms