Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 MIR7706-201ENST00000613747 67 ntBASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 KRT8P49-201ENST00000604166 1432 ntBASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
AP4E1Q9UPM8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 AL031284.1-201ENST00000419297 478 ntBASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 AL049840.3-201ENST00000602669 611 ntBASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 FLJ38576-201ENST00000623820 2459 ntBASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 AC002310.6-201ENST00000624451 1377 ntBASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
AP4E1Q9UPM8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 AP002490.2-201ENST00000524791 560 ntBASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 AC008667.4-201ENST00000607370 168 ntBASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 AC005593.1-201ENST00000624894 515 ntBASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
AP4E1Q9UPM8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
AP4E1Q9UPM8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms