Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 AC092053.1-201ENST00000605787 1936 ntBASIC16.87■□□□□ 0.29
VPS35Q96QK1 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS35Q96QK1 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS35Q96QK1 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 HCG4B-203ENST00000450128 991 ntBASIC16.86■□□□□ 0.29
VPS35Q96QK1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 FAM197Y3-203ENST00000618346 717 ntBASIC16.86■□□□□ 0.29
VPS35Q96QK1 REXO1L3P-201ENST00000622202 1288 ntBASIC16.86■□□□□ 0.29
VPS35Q96QK1 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 AP001094.4-201ENST00000579008 2176 ntBASIC16.86■□□□□ 0.29
VPS35Q96QK1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS35Q96QK1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS35Q96QK1 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AC107918.2-201ENST00000530817 355 ntBASIC16.85■□□□□ 0.29
VPS35Q96QK1 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms