Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 UXT-AS1-201ENST00000590504 1525 ntBASIC16.5■□□□□ 0.23
LMX1AQ8TE12 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 SLC25A1P3-201ENST00000395415 828 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 FAM58DP-201ENST00000428076 619 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AC069335.1-201ENST00000489972 472 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AC091167.2-201ENST00000579581 588 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AP001350.2-201ENST00000625104 1094 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 SLC22A20-204ENST00000530038 1673 ntBASIC16.49■□□□□ 0.23
LMX1AQ8TE12 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LMX1AQ8TE12 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 AL138688.1-201ENST00000624851 1594 ntBASIC16.48■□□□□ 0.23
LMX1AQ8TE12 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 AC092474.2-201ENST00000424288 719 ntBASIC16.48■□□□□ 0.23
LMX1AQ8TE12 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 AC109635.5-201ENST00000533593 962 ntBASIC16.48■□□□□ 0.23
LMX1AQ8TE12 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 AC087641.1-201ENST00000557561 1021 ntBASIC16.48■□□□□ 0.23
LMX1AQ8TE12 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 AL031055.1-201ENST00000606362 631 ntBASIC16.48■□□□□ 0.23
LMX1AQ8TE12 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 GNAS-203ENST00000306120 1878 ntBASIC16.48■□□□□ 0.23
LMX1AQ8TE12 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.48■□□□□ 0.23
LMX1AQ8TE12 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms