Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SH3RF1Q7Z6J0 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 NCF1C-201ENST00000438382 1427 ntBASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SH3RF1Q7Z6J0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 EGFEM1P-202ENST00000431685 1563 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 AC124067.4-201ENST00000519691 2379 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 AC004461.1-201ENST00000412461 403 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 STK19B-204ENST00000512515 211 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 AC109322.1-201ENST00000524499 1264 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 AC096734.2-201ENST00000562054 433 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 AC025580.3-201ENST00000617932 1424 ntBASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SH3RF1Q7Z6J0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 HLA-J-202ENST00000469281 1241 ntBASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 MIR4745-201ENST00000577608 62 ntBASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 AC010654.1-201ENST00000615722 808 ntBASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 AC091812.2-201ENST00000619081 385 ntBASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 AL513210.1-201ENST00000629608 234 ntBASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.4■□□□□ 0.7
SH3RF1Q7Z6J0 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms