Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PRKDCP78527 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PRKDCP78527 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC12.06□□□□□ -0.48
PRKDCP78527 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC12.06□□□□□ -0.48
PRKDCP78527 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
PRKDCP78527 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
PRKDCP78527 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.06□□□□□ -0.48
PRKDCP78527 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.06□□□□□ -0.48
PRKDCP78527 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.06□□□□□ -0.48
PRKDCP78527 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12.06□□□□□ -0.48
PRKDCP78527 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
PRKDCP78527 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.06□□□□□ -0.48
PRKDCP78527 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
PRKDCP78527 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC12.06□□□□□ -0.48
PRKDCP78527 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC12.06□□□□□ -0.48
PRKDCP78527 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PRKDCP78527 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 HIST2H2BC-201ENST00000498492 580 ntBASIC12.05□□□□□ -0.48
PRKDCP78527 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 AC073592.3-201ENST00000625118 1834 ntBASIC12.05□□□□□ -0.48
PRKDCP78527 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
PRKDCP78527 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC12.05□□□□□ -0.48
PRKDCP78527 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.05□□□□□ -0.48
PRKDCP78527 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC12.05□□□□□ -0.48
PRKDCP78527 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.05□□□□□ -0.48
PRKDCP78527 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.05□□□□□ -0.48
PRKDCP78527 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 RN7SL769P-201ENST00000469386 295 ntBASIC12.05□□□□□ -0.48
PRKDCP78527 AC091804.1-201ENST00000486888 567 ntBASIC12.05□□□□□ -0.48
PRKDCP78527 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.05□□□□□ -0.48
PRKDCP78527 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
PRKDCP78527 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
PRKDCP78527 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms