Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.44□□□□□ -0.1
USF1P22415 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.44□□□□□ -0.1
USF1P22415 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.44□□□□□ -0.1
USF1P22415 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.44□□□□□ -0.1
USF1P22415 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.44□□□□□ -0.1
USF1P22415 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 AL645939.2-201ENST00000427340 991 ntBASIC14.44□□□□□ -0.1
USF1P22415 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
USF1P22415 AC074386.1-202ENST00000463561 864 ntBASIC14.44□□□□□ -0.1
USF1P22415 CYMP-203ENST00000474680 1263 ntBASIC14.44□□□□□ -0.1
USF1P22415 RFPL4AP1-201ENST00000530883 850 ntBASIC14.44□□□□□ -0.1
USF1P22415 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.44□□□□□ -0.1
USF1P22415 AC023141.13-201ENST00000604991 943 ntBASIC14.44□□□□□ -0.1
USF1P22415 LINC02084-201ENST00000606069 1096 ntBASIC14.44□□□□□ -0.1
USF1P22415 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
USF1P22415 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USF1P22415 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.44□□□□□ -0.1
USF1P22415 PI4KAP1-204ENST00000612579 1703 ntBASIC14.44□□□□□ -0.1
USF1P22415 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
USF1P22415 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
USF1P22415 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.43□□□□□ -0.1
USF1P22415 RHOQP3-201ENST00000437982 621 ntBASIC14.43□□□□□ -0.1
USF1P22415 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.43□□□□□ -0.1
USF1P22415 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
USF1P22415 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.43□□□□□ -0.1
USF1P22415 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
USF1P22415 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USF1P22415 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
USF1P22415 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.42□□□□□ -0.1
USF1P22415 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 AC025580.3-201ENST00000617932 1424 ntBASIC14.42□□□□□ -0.1
USF1P22415 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.42□□□□□ -0.1
USF1P22415 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms