Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 GPS2P2-201ENST00000430745 888 ntBASIC19.12■□□□□ 0.65
COL20A1Q9P218 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 RN7SL589P-201ENST00000481268 310 ntBASIC19.12■□□□□ 0.65
COL20A1Q9P218 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 LINC00628-201ENST00000628516 1289 ntBASIC19.12■□□□□ 0.65
COL20A1Q9P218 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.12■□□□□ 0.65
COL20A1Q9P218 AL645608.8-201ENST00000606034 2086 ntBASIC19.12■□□□□ 0.65
COL20A1Q9P218 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL20A1Q9P218 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 LINC00895-201ENST00000629028 1637 ntBASIC19.11■□□□□ 0.65
COL20A1Q9P218 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC005237.2-201ENST00000434368 219 ntBASIC19.11■□□□□ 0.65
COL20A1Q9P218 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 MIR3909-201ENST00000579518 119 ntBASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.11■□□□□ 0.65
COL20A1Q9P218 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC016027.1-202ENST00000607927 1699 ntBASIC19.11■□□□□ 0.65
COL20A1Q9P218 AL671710.1-201ENST00000610245 2349 ntBASIC19.11■□□□□ 0.65
COL20A1Q9P218 AL023806.1-201ENST00000603994 1649 ntBASIC19.11■□□□□ 0.65
COL20A1Q9P218 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL20A1Q9P218 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 WASH6P-202ENST00000359512 1437 ntBASIC19.1■□□□□ 0.65
COL20A1Q9P218 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 PCDHB17P-201ENST00000539533 2393 ntBASIC19.1■□□□□ 0.65
COL20A1Q9P218 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 AC004449.1-201ENST00000564240 433 ntBASIC19.1■□□□□ 0.65
COL20A1Q9P218 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL20A1Q9P218 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.1■□□□□ 0.65
COL20A1Q9P218 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
COL20A1Q9P218 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.09■□□□□ 0.65
COL20A1Q9P218 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL20A1Q9P218 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms