Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
COL12A1Q99715 AC007551.1-201ENST00000457394 519 ntBASIC14.68□□□□□ -0.06
COL12A1Q99715 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.68□□□□□ -0.06
COL12A1Q99715 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.68□□□□□ -0.06
COL12A1Q99715 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.68□□□□□ -0.06
COL12A1Q99715 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.68□□□□□ -0.06
COL12A1Q99715 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL12A1Q99715 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL12A1Q99715 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL12A1Q99715 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL12A1Q99715 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL12A1Q99715 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
COL12A1Q99715 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC14.67□□□□□ -0.06
COL12A1Q99715 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
COL12A1Q99715 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL12A1Q99715 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.67□□□□□ -0.06
COL12A1Q99715 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.67□□□□□ -0.06
COL12A1Q99715 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL12A1Q99715 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
COL12A1Q99715 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC025048.3-201ENST00000590609 569 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.67□□□□□ -0.06
COL12A1Q99715 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.67□□□□□ -0.06
COL12A1Q99715 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC099336.1-201ENST00000417053 1171 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AC142381.1-201ENST00000426099 345 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.67□□□□□ -0.06
COL12A1Q99715 DOC2GP-202ENST00000514950 1163 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.67□□□□□ -0.06
COL12A1Q99715 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
COL12A1Q99715 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC015967.2-201ENST00000624092 234 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AC006435.4-201ENST00000625037 234 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AL356737.1-201ENST00000634391 234 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.67□□□□□ -0.06
COL12A1Q99715 AL031598.1-201ENST00000561511 1773 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.67□□□□□ -0.06
COL12A1Q99715 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 CTBP2P5-201ENST00000454986 1264 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC079328.1-201ENST00000560358 952 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AC005412.3-201ENST00000580309 715 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.67□□□□□ -0.06
COL12A1Q99715 AC010319.3-201ENST00000597028 470 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AC106872.11-201ENST00000605838 421 ntBASIC14.67□□□□□ -0.06
COL12A1Q99715 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
COL12A1Q99715 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 BANF1P1-201ENST00000553684 263 ntBASIC14.66□□□□□ -0.06
COL12A1Q99715 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.66□□□□□ -0.06
COL12A1Q99715 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 BTNL10-201ENST00000595971 695 ntBASIC14.66□□□□□ -0.06
COL12A1Q99715 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 SLC25A24-204ENST00000569674 2357 ntBASIC14.66□□□□□ -0.06
COL12A1Q99715 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL12A1Q99715 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 ACTG1P17-201ENST00000558391 1119 ntBASIC14.66□□□□□ -0.06
COL12A1Q99715 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.66□□□□□ -0.06
COL12A1Q99715 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.66□□□□□ -0.06
COL12A1Q99715 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.66□□□□□ -0.06
COL12A1Q99715 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL12A1Q99715 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms