Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.16■□□□□ 0.02
SPENQ96T58 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.16■□□□□ 0.02
SPENQ96T58 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SPENQ96T58 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SPENQ96T58 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 ANKRD19P-201ENST00000338192 862 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.15■□□□□ 0.02
SPENQ96T58 MIR4515-201ENST00000584082 81 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 AL162274.1-201ENST00000617191 1098 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.15■□□□□ 0.02
SPENQ96T58 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SPENQ96T58 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.15■□□□□ 0.02
SPENQ96T58 MIR4259-201ENST00000584466 101 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.15■□□□□ 0.02
SPENQ96T58 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.15■□□□□ 0.02
SPENQ96T58 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.15■□□□□ 0.02
SPENQ96T58 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.15■□□□□ 0.02
SPENQ96T58 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.15■□□□□ 0.02
SPENQ96T58 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.15■□□□□ 0.02
SPENQ96T58 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.15■□□□□ 0.02
SPENQ96T58 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.15■□□□□ 0.02
SPENQ96T58 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPENQ96T58 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.15■□□□□ 0.02
SPENQ96T58 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SPENQ96T58 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.14■□□□□ 0.01
SPENQ96T58 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 AC092053.1-201ENST00000605787 1936 ntBASIC15.14■□□□□ 0.01
SPENQ96T58 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC15.14■□□□□ 0.01
SPENQ96T58 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.14■□□□□ 0.01
SPENQ96T58 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.14■□□□□ 0.01
SPENQ96T58 IGHV3-52-201ENST00000519770 353 ntBASIC15.14■□□□□ 0.01
SPENQ96T58 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.14■□□□□ 0.01
SPENQ96T58 AL080243.2-201ENST00000418783 582 ntBASIC15.14■□□□□ 0.01
SPENQ96T58 AC241585.1-201ENST00000433527 519 ntBASIC15.14■□□□□ 0.01
SPENQ96T58 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
SPENQ96T58 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.14■□□□□ 0.01
SPENQ96T58 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.14■□□□□ 0.01
SPENQ96T58 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.14■□□□□ 0.01
SPENQ96T58 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPENQ96T58 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.13■□□□□ 0.01
SPENQ96T58 AC018470.1-201ENST00000624790 3129 ntBASIC15.13■□□□□ 0.01
SPENQ96T58 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.13■□□□□ 0.01
SPENQ96T58 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.13■□□□□ 0.01
SPENQ96T58 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.13■□□□□ 0.01
SPENQ96T58 ABALON-201ENST00000629058 1903 ntBASIC15.13■□□□□ 0.01
SPENQ96T58 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.13■□□□□ 0.01
SPENQ96T58 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.13■□□□□ 0.01
SPENQ96T58 AC106886.1-201ENST00000568660 600 ntBASIC15.13■□□□□ 0.01
SPENQ96T58 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.13■□□□□ 0.01
SPENQ96T58 AC018529.1-201ENST00000613063 361 ntBASIC15.13■□□□□ 0.01
SPENQ96T58 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.13■□□□□ 0.01
SPENQ96T58 AL353732.1-201ENST00000569618 1459 ntBASIC15.13■□□□□ 0.01
SPENQ96T58 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SPENQ96T58 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPENQ96T58 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.13■□□□□ 0.01
SPENQ96T58 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms