Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 AC105020.1-201ENST00000435356 2205 ntBASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 AC010654.1-201ENST00000615722 808 ntBASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
NKX2-3Q8TAU0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AL645728.1-201ENST00000366221 2101 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AC005034.1-201ENST00000426657 489 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 FAM185BP-201ENST00000443595 716 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AC025678.2-201ENST00000562061 970 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AL031432.2-201ENST00000566714 459 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AL928711.1-201ENST00000570165 459 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AL035252.4-201ENST00000624174 288 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 AC106886.4-201ENST00000623557 2502 ntBASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX2-3Q8TAU0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 RHOQP3-201ENST00000437982 621 ntBASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 AC124947.2-201ENST00000547118 1133 ntBASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 AC004835.2-201ENST00000603762 682 ntBASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 GGTLC5P-201ENST00000617623 998 ntBASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 AC079416.2-201ENST00000625035 1193 ntBASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX2-3Q8TAU0 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 AL139400.1-201ENST00000366220 510 ntBASIC20.02■□□□□ 0.8
NKX2-3Q8TAU0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms