Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PMPCAP1-201ENST00000508114 1576 ntBASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 AC104819.1-201ENST00000504587 486 ntBASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 AC092119.3-201ENST00000612618 583 ntBASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 AC114341.1-201ENST00000618070 349 ntBASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 AL358472.4-201ENST00000633140 710 ntBASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CLHC1Q8NHS4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 NUS1P2-201ENST00000417358 873 ntBASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 NUS1P1-201ENST00000446295 882 ntBASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 AC099336.1-202ENST00000602961 463 ntBASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 AP000550.4-202ENST00000639755 178 ntBASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.37■□□□□ 0.21
CLHC1Q8NHS4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms