Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.31■□□□□ 0.36
USP39Q53GS9 AC023141.5-201ENST00000458585 616 ntBASIC17.31■□□□□ 0.36
USP39Q53GS9 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.31■□□□□ 0.36
USP39Q53GS9 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.31■□□□□ 0.36
USP39Q53GS9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.31■□□□□ 0.36
USP39Q53GS9 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.31■□□□□ 0.36
USP39Q53GS9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
USP39Q53GS9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.31■□□□□ 0.36
USP39Q53GS9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
USP39Q53GS9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 AC100803.2-201ENST00000562459 1963 ntBASIC17.3■□□□□ 0.36
USP39Q53GS9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
USP39Q53GS9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.3■□□□□ 0.36
USP39Q53GS9 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 FAM86GP-201ENST00000448322 971 ntBASIC17.3■□□□□ 0.36
USP39Q53GS9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 AC022145.2-201ENST00000598203 171 ntBASIC17.3■□□□□ 0.36
USP39Q53GS9 LINC00628-201ENST00000628516 1289 ntBASIC17.3■□□□□ 0.36
USP39Q53GS9 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.3■□□□□ 0.36
USP39Q53GS9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.3■□□□□ 0.36
USP39Q53GS9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.3■□□□□ 0.36
USP39Q53GS9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP39Q53GS9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.29■□□□□ 0.36
USP39Q53GS9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.29■□□□□ 0.36
USP39Q53GS9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USP39Q53GS9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 CROCCP1-201ENST00000426910 5675 ntBASIC17.29■□□□□ 0.36
USP39Q53GS9 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.29■□□□□ 0.36
USP39Q53GS9 AL590787.1-201ENST00000568856 1315 ntBASIC17.29■□□□□ 0.36
USP39Q53GS9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
USP39Q53GS9 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.29■□□□□ 0.36
USP39Q53GS9 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.29■□□□□ 0.36
USP39Q53GS9 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.29■□□□□ 0.36
USP39Q53GS9 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.29■□□□□ 0.36
USP39Q53GS9 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.29■□□□□ 0.36
USP39Q53GS9 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.29■□□□□ 0.36
USP39Q53GS9 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 AC239800.4-201ENST00000603712 296 ntBASIC17.29■□□□□ 0.36
USP39Q53GS9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.29■□□□□ 0.36
USP39Q53GS9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USP39Q53GS9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.29■□□□□ 0.36
USP39Q53GS9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP39Q53GS9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP39Q53GS9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.28■□□□□ 0.36
USP39Q53GS9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
USP39Q53GS9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms