Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TIMM8BP1-201ENST00000452384 211 ntBASIC16.38■□□□□ 0.21
COL28A1Q2UY09 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AC051619.7-201ENST00000568314 623 ntBASIC16.38■□□□□ 0.21
COL28A1Q2UY09 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AC068137.2-201ENST00000605408 478 ntBASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.38■□□□□ 0.21
COL28A1Q2UY09 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 NCF1C-201ENST00000438382 1427 ntBASIC16.37■□□□□ 0.21
COL28A1Q2UY09 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 NME2P1-201ENST00000426182 414 ntBASIC16.37■□□□□ 0.21
COL28A1Q2UY09 DDX43P3-201ENST00000441064 443 ntBASIC16.37■□□□□ 0.21
COL28A1Q2UY09 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL28A1Q2UY09 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 SLC25A39P2-201ENST00000537614 270 ntBASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 AC100803.2-201ENST00000562459 1963 ntBASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL28A1Q2UY09 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms