Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDH1Q08174 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDH1Q08174 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH1Q08174 LAGE3P1-201ENST00000425356 484 ntBASIC16.43■□□□□ 0.22
PCDH1Q08174 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH1Q08174 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDH1Q08174 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.43■□□□□ 0.22
PCDH1Q08174 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH1Q08174 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
PCDH1Q08174 AC107918.4-202ENST00000641623 219 ntBASIC16.43■□□□□ 0.22
PCDH1Q08174 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDH1Q08174 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDH1Q08174 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PCDH1Q08174 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 KRT8P49-201ENST00000604166 1432 ntBASIC16.43■□□□□ 0.22
PCDH1Q08174 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PCDH1Q08174 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH1Q08174 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
PCDH1Q08174 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDH1Q08174 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
PCDH1Q08174 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 PCDHB17P-201ENST00000539533 2393 ntBASIC16.42■□□□□ 0.22
PCDH1Q08174 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.42■□□□□ 0.22
PCDH1Q08174 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.42■□□□□ 0.22
PCDH1Q08174 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 KRT18P27-201ENST00000427733 1299 ntBASIC16.42■□□□□ 0.22
PCDH1Q08174 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.42■□□□□ 0.22
PCDH1Q08174 UNC93B7-201ENST00000509439 705 ntBASIC16.42■□□□□ 0.22
PCDH1Q08174 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
PCDH1Q08174 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.42■□□□□ 0.22
PCDH1Q08174 AC013467.2-201ENST00000605472 835 ntBASIC16.42■□□□□ 0.22
PCDH1Q08174 IFNL4P1-201ENST00000607083 540 ntBASIC16.42■□□□□ 0.22
PCDH1Q08174 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.42■□□□□ 0.22
PCDH1Q08174 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDH1Q08174 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDH1Q08174 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDH1Q08174 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDH1Q08174 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDH1Q08174 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PCDH1Q08174 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDH1Q08174 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 AL805961.1-202ENST00000641562 540 ntBASIC16.41■□□□□ 0.22
PCDH1Q08174 AL139011.1-202ENST00000642063 584 ntBASIC16.41■□□□□ 0.22
PCDH1Q08174 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.41■□□□□ 0.22
PCDH1Q08174 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PCDH1Q08174 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms