Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 TERC-201ENST00000602385 541 ntBASIC16.17■□□□□ 0.18
LIM2P55344 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 AC005593.1-201ENST00000624894 515 ntBASIC16.17■□□□□ 0.18
LIM2P55344 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.17■□□□□ 0.18
LIM2P55344 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.17■□□□□ 0.18
LIM2P55344 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.17■□□□□ 0.18
LIM2P55344 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.17■□□□□ 0.18
LIM2P55344 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LIM2P55344 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.16■□□□□ 0.18
LIM2P55344 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.16■□□□□ 0.18
LIM2P55344 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LIM2P55344 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.16■□□□□ 0.18
LIM2P55344 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.16■□□□□ 0.18
LIM2P55344 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.16■□□□□ 0.18
LIM2P55344 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 PAWRP1-201ENST00000451083 565 ntBASIC16.16■□□□□ 0.18
LIM2P55344 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.16■□□□□ 0.18
LIM2P55344 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.16■□□□□ 0.18
LIM2P55344 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LIM2P55344 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LIM2P55344 AC117500.6-201ENST00000624871 588 ntBASIC16.16■□□□□ 0.18
LIM2P55344 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.16■□□□□ 0.18
LIM2P55344 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
LIM2P55344 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 AC005915.1-201ENST00000624912 2018 ntBASIC16.16■□□□□ 0.18
LIM2P55344 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.16■□□□□ 0.18
LIM2P55344 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIM2P55344 FLJ38576-201ENST00000623820 2459 ntBASIC16.16■□□□□ 0.18
LIM2P55344 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.16■□□□□ 0.18
LIM2P55344 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LIM2P55344 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.15■□□□□ 0.18
LIM2P55344 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.15■□□□□ 0.18
LIM2P55344 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.15■□□□□ 0.18
LIM2P55344 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.15■□□□□ 0.18
LIM2P55344 AC079776.4-201ENST00000511039 504 ntBASIC16.15■□□□□ 0.18
LIM2P55344 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.15■□□□□ 0.18
LIM2P55344 AC092068.3-201ENST00000587894 2016 ntBASIC16.15■□□□□ 0.18
LIM2P55344 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 AC008667.4-201ENST00000607370 168 ntBASIC16.15■□□□□ 0.18
LIM2P55344 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.15■□□□□ 0.18
LIM2P55344 AF228730.7-201ENST00000641842 219 ntBASIC16.15■□□□□ 0.18
LIM2P55344 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
LIM2P55344 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 PKD1P1-201ENST00000458669 6805 ntBASIC16.15■□□□□ 0.18
LIM2P55344 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 AC105020.1-201ENST00000435356 2205 ntBASIC16.15■□□□□ 0.18
LIM2P55344 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.15■□□□□ 0.18
LIM2P55344 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
LIM2P55344 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LIM2P55344 PCDHA14-201ENST00000506751 2298 ntBASIC16.15■□□□□ 0.18
LIM2P55344 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.15■□□□□ 0.18
LIM2P55344 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIM2P55344 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms