Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR5100-201ENST00000579544 119 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.5■□□□□ 0.23
FOXA1P55317 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 AC092119.3-201ENST00000612618 583 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 AC073592.4-201ENST00000623827 446 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 AL590326.2-201ENST00000625139 305 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 AL358472.4-201ENST00000633140 710 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 AP000550.4-202ENST00000639755 178 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
FOXA1P55317 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA1P55317 AC046158.3-201ENST00000624947 2558 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
FOXA1P55317 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA1P55317 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
FOXA1P55317 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA1P55317 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
FOXA1P55317 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 AC079776.2-201ENST00000641154 1609 ntBASIC16.49■□□□□ 0.23
FOXA1P55317 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.49■□□□□ 0.23
FOXA1P55317 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 AP002414.1-201ENST00000391405 1147 ntBASIC16.49■□□□□ 0.23
FOXA1P55317 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 NUS1P2-201ENST00000417358 873 ntBASIC16.49■□□□□ 0.23
FOXA1P55317 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.49■□□□□ 0.23
FOXA1P55317 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.49■□□□□ 0.23
FOXA1P55317 AC012615.1-201ENST00000565797 1299 ntBASIC16.49■□□□□ 0.23
FOXA1P55317 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
FOXA1P55317 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 PCDHA1-201ENST00000378133 2726 ntBASIC16.49■□□□□ 0.23
FOXA1P55317 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
FOXA1P55317 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA1P55317 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.48■□□□□ 0.23
FOXA1P55317 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA1P55317 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
FOXA1P55317 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms