Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC23.57■■□□□ 1.36
NPHP4O75161 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC23.57■■□□□ 1.36
NPHP4O75161 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.57■■□□□ 1.36
NPHP4O75161 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NPHP4O75161 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC23.57■■□□□ 1.36
NPHP4O75161 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC23.57■■□□□ 1.36
NPHP4O75161 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC23.57■■□□□ 1.36
NPHP4O75161 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC23.57■■□□□ 1.36
NPHP4O75161 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
NPHP4O75161 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC23.56■■□□□ 1.36
NPHP4O75161 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC23.56■■□□□ 1.36
NPHP4O75161 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC23.56■■□□□ 1.36
NPHP4O75161 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC23.56■■□□□ 1.36
NPHP4O75161 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC23.56■■□□□ 1.36
NPHP4O75161 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 AC010319.3-201ENST00000597028 470 ntBASIC23.56■■□□□ 1.36
NPHP4O75161 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC23.56■■□□□ 1.36
NPHP4O75161 AL033527.5-202ENST00000641632 1098 ntBASIC23.56■■□□□ 1.36
NPHP4O75161 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NPHP4O75161 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC23.55■■□□□ 1.36
NPHP4O75161 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC23.55■■□□□ 1.36
NPHP4O75161 KRT43P-201ENST00000434019 910 ntBASIC23.55■■□□□ 1.36
NPHP4O75161 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC23.55■■□□□ 1.36
NPHP4O75161 RRP7BP-205ENST00000566851 833 ntBASIC23.55■■□□□ 1.36
NPHP4O75161 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC23.55■■□□□ 1.36
NPHP4O75161 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC23.55■■□□□ 1.36
NPHP4O75161 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
NPHP4O75161 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC23.55■■□□□ 1.36
NPHP4O75161 AC018665.1-201ENST00000622927 1362 ntBASIC23.55■■□□□ 1.36
NPHP4O75161 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP4O75161 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC23.54■■□□□ 1.36
NPHP4O75161 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
NPHP4O75161 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 WIZP1-201ENST00000531444 2299 ntBASIC23.54■■□□□ 1.36
NPHP4O75161 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC23.54■■□□□ 1.36
NPHP4O75161 AC099336.1-201ENST00000417053 1171 ntBASIC23.54■■□□□ 1.36
NPHP4O75161 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
NPHP4O75161 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC23.54■■□□□ 1.36
NPHP4O75161 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC23.54■■□□□ 1.36
NPHP4O75161 AC103810.3-201ENST00000583567 96 ntBASIC23.54■■□□□ 1.36
NPHP4O75161 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC23.54■■□□□ 1.36
NPHP4O75161 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC23.54■■□□□ 1.36
NPHP4O75161 AC093525.8-201ENST00000624099 1342 ntBASIC23.54■■□□□ 1.36
NPHP4O75161 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP4O75161 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP4O75161 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
NPHP4O75161 PDIA3P1-201ENST00000471856 1510 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP4O75161 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP4O75161 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP4O75161 AC092506.1-202ENST00000401022 528 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC23.53■■□□□ 1.36
NPHP4O75161 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP4O75161 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC23.53■■□□□ 1.36
NPHP4O75161 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP4O75161 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC23.53■■□□□ 1.36
NPHP4O75161 SDHAP3-202ENST00000515467 728 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC23.53■■□□□ 1.36
NPHP4O75161 MIR8072-201ENST00000614241 80 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 AL139099.5-201ENST00000635274 300 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC23.53■■□□□ 1.36
NPHP4O75161 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
NPHP4O75161 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
NPHP4O75161 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP4O75161 KRT8P12-202ENST00000472924 1397 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 NOC2LP1-202ENST00000452600 2235 ntBASIC23.53■■□□□ 1.36
NPHP4O75161 KRT8P49-201ENST00000604166 1432 ntBASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms