Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LDB3O75112 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.02■□□□□ 0.16
LDB3O75112 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
LDB3O75112 PCDHA12-202ENST00000613593 2588 ntBASIC16.02■□□□□ 0.16
LDB3O75112 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
LDB3O75112 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.02■□□□□ 0.16
LDB3O75112 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.02■□□□□ 0.16
LDB3O75112 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.02■□□□□ 0.16
LDB3O75112 AC108751.1-201ENST00000490852 363 ntBASIC16.02■□□□□ 0.16
LDB3O75112 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.02■□□□□ 0.16
LDB3O75112 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.02■□□□□ 0.16
LDB3O75112 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.02■□□□□ 0.16
LDB3O75112 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDB3O75112 GGTLC5P-201ENST00000617623 998 ntBASIC16.02■□□□□ 0.16
LDB3O75112 AC004790.2-201ENST00000623588 572 ntBASIC16.02■□□□□ 0.16
LDB3O75112 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
LDB3O75112 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.02■□□□□ 0.15
LDB3O75112 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDB3O75112 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.02■□□□□ 0.15
LDB3O75112 AC005915.1-201ENST00000624912 2018 ntBASIC16.02■□□□□ 0.15
LDB3O75112 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.02■□□□□ 0.15
LDB3O75112 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.02■□□□□ 0.15
LDB3O75112 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
LDB3O75112 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDB3O75112 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDB3O75112 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LDB3O75112 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.01■□□□□ 0.15
LDB3O75112 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
LDB3O75112 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.01■□□□□ 0.15
LDB3O75112 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
LDB3O75112 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.01■□□□□ 0.15
LDB3O75112 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.01■□□□□ 0.15
LDB3O75112 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.01■□□□□ 0.15
LDB3O75112 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.01■□□□□ 0.15
LDB3O75112 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.01■□□□□ 0.15
LDB3O75112 RPL13AP23-201ENST00000480739 586 ntBASIC16.01■□□□□ 0.15
LDB3O75112 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.01■□□□□ 0.15
LDB3O75112 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.01■□□□□ 0.15
LDB3O75112 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.01■□□□□ 0.15
LDB3O75112 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 AC104109.2-201ENST00000602919 1418 ntBASIC16.01■□□□□ 0.15
LDB3O75112 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.01■□□□□ 0.15
LDB3O75112 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LDB3O75112 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
LDB3O75112 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LDB3O75112 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
LDB3O75112 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16■□□□□ 0.15
LDB3O75112 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16■□□□□ 0.15
LDB3O75112 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 AC009947.1-201ENST00000444350 727 ntBASIC16■□□□□ 0.15
LDB3O75112 SLC25A6P2-201ENST00000497974 877 ntBASIC16■□□□□ 0.15
LDB3O75112 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16■□□□□ 0.15
LDB3O75112 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
LDB3O75112 SLC25A1P1-201ENST00000528351 927 ntBASIC16■□□□□ 0.15
LDB3O75112 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16■□□□□ 0.15
LDB3O75112 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16■□□□□ 0.15
LDB3O75112 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16■□□□□ 0.15
LDB3O75112 MIR4751-201ENST00000578027 74 ntBASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms