Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 DUSP5P1-201ENST00000441325 1139 ntBASIC18.22■□□□□ 0.51
FOXN3O00409 PAWRP1-201ENST00000451083 565 ntBASIC18.22■□□□□ 0.51
FOXN3O00409 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXN3O00409 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXN3O00409 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXN3O00409 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
FOXN3O00409 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
FOXN3O00409 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXN3O00409 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXN3O00409 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXN3O00409 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
FOXN3O00409 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.21■□□□□ 0.51
FOXN3O00409 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXN3O00409 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXN3O00409 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXN3O00409 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXN3O00409 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXN3O00409 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXN3O00409 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXN3O00409 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 AC107918.4-202ENST00000641623 219 ntBASIC18.21■□□□□ 0.51
FOXN3O00409 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 KRT8P49-201ENST00000604166 1432 ntBASIC18.21■□□□□ 0.51
FOXN3O00409 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXN3O00409 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXN3O00409 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
FOXN3O00409 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
FOXN3O00409 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
FOXN3O00409 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.2■□□□□ 0.5
FOXN3O00409 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.2■□□□□ 0.5
FOXN3O00409 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.2■□□□□ 0.5
FOXN3O00409 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
FOXN3O00409 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
FOXN3O00409 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXN3O00409 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
FOXN3O00409 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXN3O00409 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXN3O00409 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXN3O00409 HLA-A-202ENST00000376806 1854 ntBASIC18.19■□□□□ 0.5
FOXN3O00409 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXN3O00409 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 RPS2P1-201ENST00000434010 821 ntBASIC18.19■□□□□ 0.5
FOXN3O00409 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXN3O00409 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
FOXN3O00409 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXN3O00409 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms