Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 ACTG1P14-201ENST00000446382 1122 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 AL031432.2-201ENST00000566714 459 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 AL928711.1-201ENST00000570165 459 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 AP002472.1-201ENST00000577490 586 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 AC092919.2-201ENST00000623631 1645 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 LTB4R2-202ENST00000528054 3092 ntBASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.13■□□□□ 0.01
CLCF1Q9UBD9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AC067852.2-201ENST00000590513 2313 ntBASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 CEND1P1-201ENST00000451006 455 ntBASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 AC092902.6-201ENST00000641783 218 ntBASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLCF1Q9UBD9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 AC254562.1-201ENST00000417586 456 ntBASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 DUX4L17-201ENST00000557360 1267 ntBASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 MIR4515-201ENST00000584082 81 ntBASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms