Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 MIR3197-201ENST00000582241 73 ntBASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 AC004835.2-201ENST00000603762 682 ntBASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 AL513210.1-201ENST00000629608 234 ntBASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 AC006116.8-202ENST00000587620 1550 ntBASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 AL139400.1-201ENST00000366220 510 ntBASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 AC108860.2-201ENST00000562760 2183 ntBASIC17.04■□□□□ 0.32
TM9SF3Q9HD45 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 MIR770-201ENST00000390219 98 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 AC004461.1-201ENST00000412461 403 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 AL513480.1-201ENST00000451731 511 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 ACTL9-202ENST00000612068 1252 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 REXO1L3P-201ENST00000622202 1288 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 AC105339.1-204ENST00000636249 355 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 AC092919.2-201ENST00000623631 1645 ntBASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.03■□□□□ 0.32
TM9SF3Q9HD45 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms