Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 AL671277.2-201ENST00000458060 996 ntBASIC14.94□□□□□ -0.02
NKX3-1Q99801 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 PCDHA1-201ENST00000378133 2726 ntBASIC14.93□□□□□ -0.02
NKX3-1Q99801 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 AC083849.1-201ENST00000615227 514 ntBASIC14.93□□□□□ -0.02
NKX3-1Q99801 AL358472.4-201ENST00000633140 710 ntBASIC14.93□□□□□ -0.02
NKX3-1Q99801 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
NKX3-1Q99801 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NKX3-1Q99801 AC006449.5-201ENST00000610658 2098 ntBASIC14.93□□□□□ -0.02
NKX3-1Q99801 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 CLN6-204ENST00000564752 900 ntTSL 3 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms