Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC087163.2-201ENST00000457299 853 ntBASIC16.93■□□□□ 0.3
VPS35Q96QK1 SLC25A1P1-201ENST00000528351 927 ntBASIC16.93■□□□□ 0.3
VPS35Q96QK1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 AL022342.1-201ENST00000400363 863 ntBASIC16.92■□□□□ 0.3
VPS35Q96QK1 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.92■□□□□ 0.3
VPS35Q96QK1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 AC010654.1-201ENST00000615722 808 ntBASIC16.92■□□□□ 0.3
VPS35Q96QK1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS35Q96QK1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS35Q96QK1 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 AC004790.2-201ENST00000623588 572 ntBASIC16.91■□□□□ 0.3
VPS35Q96QK1 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS35Q96QK1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VPS35Q96QK1 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS35Q96QK1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.9■□□□□ 0.3
VPS35Q96QK1 SLC25A6P2-201ENST00000497974 877 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms