Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 TFAMP1-201ENST00000412727 736 ntBASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 AC005237.2-201ENST00000434368 219 ntBASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 AC079140.1-201ENST00000508039 487 ntBASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 LINC00896-202ENST00000609602 2128 ntBASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SYNGAP1Q96PV0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 AL592309.1-201ENST00000443127 649 ntBASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 RARRES2P8-201ENST00000566335 367 ntBASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 AC005412.3-201ENST00000580309 715 ntBASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 Z92544.3-201ENST00000624747 417 ntBASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.3■□□□□ 0.68
SYNGAP1Q96PV0 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 AL512356.2-201ENST00000546955 174 ntBASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 AC243562.1-201ENST00000560672 389 ntBASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 AL135744.1-201ENST00000565098 629 ntBASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNGAP1Q96PV0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNGAP1Q96PV0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SYNGAP1Q96PV0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNGAP1Q96PV0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNGAP1Q96PV0 CNN2P2-201ENST00000443536 909 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms