Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 SLC25A6P5-201ENST00000435663 894 ntBASIC17.27■□□□□ 0.36
CHFRQ96EP1 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 KLF2P3-201ENST00000451977 1087 ntBASIC17.27■□□□□ 0.36
CHFRQ96EP1 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 IGHV3-62-201ENST00000520057 340 ntBASIC17.27■□□□□ 0.36
CHFRQ96EP1 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CHFRQ96EP1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHFRQ96EP1 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.27■□□□□ 0.35
CHFRQ96EP1 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHFRQ96EP1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHFRQ96EP1 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.27■□□□□ 0.35
CHFRQ96EP1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.35
CHFRQ96EP1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 UXT-AS1-201ENST00000590504 1525 ntBASIC17.26■□□□□ 0.35
CHFRQ96EP1 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.26■□□□□ 0.35
CHFRQ96EP1 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 MIR943-201ENST00000401286 94 ntBASIC17.26■□□□□ 0.35
CHFRQ96EP1 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.26■□□□□ 0.35
CHFRQ96EP1 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.26■□□□□ 0.35
CHFRQ96EP1 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.26■□□□□ 0.35
CHFRQ96EP1 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.26■□□□□ 0.35
CHFRQ96EP1 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.26■□□□□ 0.35
CHFRQ96EP1 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 EGFEM1P-202ENST00000431685 1563 ntBASIC17.26■□□□□ 0.35
CHFRQ96EP1 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 GNAS-203ENST00000306120 1878 ntBASIC17.26■□□□□ 0.35
CHFRQ96EP1 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHFRQ96EP1 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 RNU1-129P-201ENST00000384064 167 ntBASIC17.25■□□□□ 0.35
CHFRQ96EP1 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 RNA5SP421-201ENST00000516864 134 ntBASIC17.25■□□□□ 0.35
CHFRQ96EP1 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 U1.21-201ENST00000580816 167 ntBASIC17.25■□□□□ 0.35
CHFRQ96EP1 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHFRQ96EP1 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CHFRQ96EP1 FO538757.1-201ENST00000623083 1397 ntBASIC17.25■□□□□ 0.35
CHFRQ96EP1 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHFRQ96EP1 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CHFRQ96EP1 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms