Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 AC003669.1-201ENST00000334569 611 ntBASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 RPS15P9-201ENST00000494093 319 ntBASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 IGHV3-65-201ENST00000523210 341 ntBASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 AC018845.2-201ENST00000568326 409 ntBASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC144BQ3MJ40 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 HCG4B-203ENST00000450128 991 ntBASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 ALG1L5P-201ENST00000482043 771 ntBASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 YBX1P5-201ENST00000509441 847 ntBASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 AC109462.3-201ENST00000573934 613 ntBASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 AC004790.2-201ENST00000623588 572 ntBASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC144BQ3MJ40 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 PCDHA14-201ENST00000506751 2298 ntBASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 PRSS29P-201ENST00000440800 595 ntBASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 AL513190.1-201ENST00000621254 727 ntBASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC144BQ3MJ40 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms