Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 MYCLP1-201ENST00000372451 1075 ntBASIC16.1■□□□□ 0.17
SOX3P41225 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 AL590627.1-203ENST00000421194 1026 ntBASIC16.1■□□□□ 0.17
SOX3P41225 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.1■□□□□ 0.17
SOX3P41225 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.1■□□□□ 0.17
SOX3P41225 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.1■□□□□ 0.17
SOX3P41225 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 AC243591.1-201ENST00000452967 1364 ntBASIC16.1■□□□□ 0.17
SOX3P41225 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
SOX3P41225 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX3P41225 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.09■□□□□ 0.17
SOX3P41225 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
SOX3P41225 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.09■□□□□ 0.17
SOX3P41225 PRYP5-201ENST00000451909 266 ntBASIC16.09■□□□□ 0.17
SOX3P41225 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 AC139887.3-201ENST00000568585 713 ntBASIC16.09■□□□□ 0.17
SOX3P41225 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
SOX3P41225 AC107918.4-202ENST00000641623 219 ntBASIC16.09■□□□□ 0.17
SOX3P41225 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SOX3P41225 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SOX3P41225 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX3P41225 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX3P41225 AC009336.1-201ENST00000608941 1553 ntBASIC16.09■□□□□ 0.17
SOX3P41225 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX3P41225 PCDHA14-201ENST00000506751 2298 ntBASIC16.08■□□□□ 0.17
SOX3P41225 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX3P41225 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
SOX3P41225 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX3P41225 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.08■□□□□ 0.17
SOX3P41225 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX3P41225 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX3P41225 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SOX3P41225 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 AL022342.1-201ENST00000400363 863 ntBASIC16.08■□□□□ 0.16
SOX3P41225 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms