Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL5A3P25940 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL5A3P25940 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC21.15■□□□□ 0.98
COL5A3P25940 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.15■□□□□ 0.98
COL5A3P25940 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC21.15■□□□□ 0.98
COL5A3P25940 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 POLE2-203ENST00000553805 496 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC21.15■□□□□ 0.98
COL5A3P25940 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.15■□□□□ 0.98
COL5A3P25940 SPTSSB-204ENST00000617024 1292 ntBASIC21.15■□□□□ 0.98
COL5A3P25940 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC21.14■□□□□ 0.98
COL5A3P25940 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
COL5A3P25940 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
COL5A3P25940 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL5A3P25940 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.14■□□□□ 0.98
COL5A3P25940 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC21.14■□□□□ 0.97
COL5A3P25940 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
COL5A3P25940 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.14■□□□□ 0.97
COL5A3P25940 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC21.14■□□□□ 0.97
COL5A3P25940 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
COL5A3P25940 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC21.14■□□□□ 0.97
COL5A3P25940 PTPA-220ENST00000436883 532 ntTSL 4 BASIC21.14■□□□□ 0.97
COL5A3P25940 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
COL5A3P25940 AC119751.2-201ENST00000504529 210 ntBASIC21.14■□□□□ 0.97
COL5A3P25940 AC105021.1-202ENST00000570572 669 ntBASIC21.14■□□□□ 0.97
COL5A3P25940 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC21.14■□□□□ 0.97
COL5A3P25940 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC21.14■□□□□ 0.97
COL5A3P25940 AL589739.1-201ENST00000607720 493 ntBASIC21.14■□□□□ 0.97
COL5A3P25940 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC21.14■□□□□ 0.97
COL5A3P25940 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
COL5A3P25940 SNX33P1-201ENST00000592116 1762 ntBASIC21.14■□□□□ 0.97
COL5A3P25940 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
COL5A3P25940 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL5A3P25940 AC004408.2-201ENST00000623613 2777 ntBASIC21.13■□□□□ 0.97
COL5A3P25940 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 AC008764.6-201ENST00000595909 2069 ntBASIC21.13■□□□□ 0.97
COL5A3P25940 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
COL5A3P25940 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 AP006294.1-201ENST00000415407 339 ntBASIC21.13■□□□□ 0.97
COL5A3P25940 DFFBP1-201ENST00000433250 979 ntBASIC21.13■□□□□ 0.97
COL5A3P25940 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 RN7SL837P-201ENST00000463010 287 ntBASIC21.13■□□□□ 0.97
COL5A3P25940 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC21.13■□□□□ 0.97
COL5A3P25940 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC21.13■□□□□ 0.97
COL5A3P25940 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.13■□□□□ 0.97
COL5A3P25940 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC21.13■□□□□ 0.97
COL5A3P25940 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
COL5A3P25940 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.13■□□□□ 0.97
COL5A3P25940 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A3P25940 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC21.12■□□□□ 0.97
COL5A3P25940 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 TMEM14DP-201ENST00000422205 345 ntBASIC21.12■□□□□ 0.97
COL5A3P25940 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A3P25940 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 AC135586.1-201ENST00000539323 574 ntBASIC21.12■□□□□ 0.97
COL5A3P25940 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A3P25940 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC21.12■□□□□ 0.97
COL5A3P25940 AC013467.2-201ENST00000605472 835 ntBASIC21.12■□□□□ 0.97
COL5A3P25940 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A3P25940 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A3P25940 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A3P25940 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL5A3P25940 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms