Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VCANP13611 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.41■□□□□ 0.38
VCANP13611 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.41■□□□□ 0.38
VCANP13611 AC006033.1-201ENST00000440505 426 ntBASIC17.41■□□□□ 0.38
VCANP13611 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.41■□□□□ 0.38
VCANP13611 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.41■□□□□ 0.38
VCANP13611 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VCANP13611 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.41■□□□□ 0.38
VCANP13611 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.41■□□□□ 0.38
VCANP13611 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
VCANP13611 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.41■□□□□ 0.38
VCANP13611 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.41■□□□□ 0.38
VCANP13611 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.41■□□□□ 0.38
VCANP13611 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.4■□□□□ 0.38
VCANP13611 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
VCANP13611 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.4■□□□□ 0.38
VCANP13611 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VCANP13611 AL627389.1-201ENST00000413508 1182 ntBASIC17.4■□□□□ 0.38
VCANP13611 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.4■□□□□ 0.38
VCANP13611 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC17.4■□□□□ 0.38
VCANP13611 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.4■□□□□ 0.38
VCANP13611 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.4■□□□□ 0.38
VCANP13611 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.4■□□□□ 0.38
VCANP13611 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 AC007613.1-201ENST00000572811 2597 ntBASIC17.4■□□□□ 0.38
VCANP13611 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.4■□□□□ 0.38
VCANP13611 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 AC091046.1-201ENST00000331871 207 ntBASIC17.4■□□□□ 0.38
VCANP13611 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VCANP13611 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VCANP13611 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.4■□□□□ 0.38
VCANP13611 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VCANP13611 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VCANP13611 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VCANP13611 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
VCANP13611 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VCANP13611 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
VCANP13611 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.39■□□□□ 0.37
VCANP13611 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.39■□□□□ 0.37
VCANP13611 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.39■□□□□ 0.37
VCANP13611 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.39■□□□□ 0.37
VCANP13611 AL135999.2-201ENST00000622438 1686 ntBASIC17.39■□□□□ 0.37
VCANP13611 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VCANP13611 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.39■□□□□ 0.37
VCANP13611 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.39■□□□□ 0.37
VCANP13611 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.39■□□□□ 0.37
VCANP13611 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 AC106820.2-201ENST00000563775 3264 ntBASIC17.39■□□□□ 0.37
VCANP13611 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VCANP13611 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
VCANP13611 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VCANP13611 AC027307.2-201ENST00000591252 911 ntBASIC17.39■□□□□ 0.37
VCANP13611 MIR8072-201ENST00000614241 80 ntBASIC17.39■□□□□ 0.37
VCANP13611 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
VCANP13611 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VCANP13611 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.38■□□□□ 0.37
VCANP13611 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.38■□□□□ 0.37
VCANP13611 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms