Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A2P12110 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A2P12110 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A2P12110 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A2P12110 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL6A2P12110 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A2P12110 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 NSUN5P1-202ENST00000421140 1535 ntBASIC16.87■□□□□ 0.29
COL6A2P12110 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 NSUN5P2-203ENST00000457352 1529 ntBASIC16.87■□□□□ 0.29
COL6A2P12110 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A2P12110 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A2P12110 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 AP002414.1-201ENST00000391405 1147 ntBASIC16.87■□□□□ 0.29
COL6A2P12110 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
COL6A2P12110 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 IGHV3-47-201ENST00000425060 335 ntBASIC16.87■□□□□ 0.29
COL6A2P12110 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
COL6A2P12110 HLA-J-202ENST00000469281 1241 ntBASIC16.87■□□□□ 0.29
COL6A2P12110 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A2P12110 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
COL6A2P12110 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
COL6A2P12110 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL6A2P12110 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 LINC00895-201ENST00000629028 1637 ntBASIC16.87■□□□□ 0.29
COL6A2P12110 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A2P12110 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A2P12110 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 AC026691.1-201ENST00000602502 2017 ntBASIC16.86■□□□□ 0.29
COL6A2P12110 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A2P12110 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 AC148477.5-201ENST00000625164 1645 ntBASIC16.86■□□□□ 0.29
COL6A2P12110 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 AC096582.2-201ENST00000510860 516 ntBASIC16.86■□□□□ 0.29
COL6A2P12110 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A2P12110 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A2P12110 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 AC114341.1-201ENST00000618070 349 ntBASIC16.86■□□□□ 0.29
COL6A2P12110 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
COL6A2P12110 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A2P12110 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
COL6A2P12110 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.85■□□□□ 0.29
COL6A2P12110 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
COL6A2P12110 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.85■□□□□ 0.29
COL6A2P12110 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL6A2P12110 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A2P12110 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A2P12110 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A2P12110 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A2P12110 AC073592.4-201ENST00000623827 446 ntBASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms