Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 AC073621.1-201ENST00000392730 636 ntBASIC17.9■□□□□ 0.46
APOEP02649 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.9■□□□□ 0.46
APOEP02649 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.9■□□□□ 0.46
APOEP02649 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.9■□□□□ 0.46
APOEP02649 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 IL9RP2-201ENST00000423948 1312 ntBASIC17.9■□□□□ 0.46
APOEP02649 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
APOEP02649 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
APOEP02649 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.89■□□□□ 0.46
APOEP02649 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
APOEP02649 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
APOEP02649 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
APOEP02649 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.89■□□□□ 0.45
APOEP02649 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.89■□□□□ 0.45
APOEP02649 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.89■□□□□ 0.45
APOEP02649 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
APOEP02649 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.89■□□□□ 0.45
APOEP02649 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
APOEP02649 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
APOEP02649 AC117500.6-201ENST00000624871 588 ntBASIC17.89■□□□□ 0.45
APOEP02649 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.89■□□□□ 0.45
APOEP02649 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
APOEP02649 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.89■□□□□ 0.45
APOEP02649 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOEP02649 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
APOEP02649 NKILA-202ENST00000614771 2598 ntBASIC17.88■□□□□ 0.45
APOEP02649 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
APOEP02649 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.88■□□□□ 0.45
APOEP02649 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.88■□□□□ 0.45
APOEP02649 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.88■□□□□ 0.45
APOEP02649 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.88■□□□□ 0.45
APOEP02649 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.88■□□□□ 0.45
APOEP02649 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.88■□□□□ 0.45
APOEP02649 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
APOEP02649 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.88■□□□□ 0.45
APOEP02649 AL805961.1-202ENST00000641562 540 ntBASIC17.88■□□□□ 0.45
APOEP02649 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
APOEP02649 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
APOEP02649 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.88■□□□□ 0.45
APOEP02649 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
APOEP02649 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
APOEP02649 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
APOEP02649 AC084018.2-201ENST00000613093 2607 ntBASIC17.87■□□□□ 0.45
APOEP02649 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.87■□□□□ 0.45
APOEP02649 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
APOEP02649 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
APOEP02649 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
APOEP02649 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
APOEP02649 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
APOEP02649 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
APOEP02649 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.87■□□□□ 0.45
APOEP02649 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
APOEP02649 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
APOEP02649 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
APOEP02649 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms