Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC21.23■□□□□ 0.99
CACNA1FO60840 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC21.23■□□□□ 0.99
CACNA1FO60840 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
CACNA1FO60840 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CACNA1FO60840 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CACNA1FO60840 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CACNA1FO60840 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC21.23■□□□□ 0.99
CACNA1FO60840 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC21.23■□□□□ 0.99
CACNA1FO60840 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.23■□□□□ 0.99
CACNA1FO60840 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CACNA1FO60840 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
CACNA1FO60840 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CACNA1FO60840 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.22■□□□□ 0.99
CACNA1FO60840 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 FAM220BP-201ENST00000377689 816 ntBASIC21.22■□□□□ 0.99
CACNA1FO60840 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.22■□□□□ 0.99
CACNA1FO60840 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.22■□□□□ 0.99
CACNA1FO60840 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 RN7SL589P-201ENST00000481268 310 ntBASIC21.22■□□□□ 0.99
CACNA1FO60840 PRYP6-201ENST00000514804 343 ntBASIC21.22■□□□□ 0.99
CACNA1FO60840 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.22■□□□□ 0.99
CACNA1FO60840 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CACNA1FO60840 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
CACNA1FO60840 AL513210.1-201ENST00000629608 234 ntBASIC21.22■□□□□ 0.99
CACNA1FO60840 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 GGT3P-204ENST00000453783 1664 ntBASIC21.22■□□□□ 0.99
CACNA1FO60840 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CACNA1FO60840 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CACNA1FO60840 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CACNA1FO60840 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 RPS8P6-201ENST00000426177 609 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 CEND1P1-201ENST00000451006 455 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
CACNA1FO60840 GPALPP1-207ENST00000611650 899 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CACNA1FO60840 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.21■□□□□ 0.99
CACNA1FO60840 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.21■□□□□ 0.99
CACNA1FO60840 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CACNA1FO60840 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 AC243562.1-201ENST00000560672 389 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.21■□□□□ 0.99
CACNA1FO60840 AC073389.1-201ENST00000595595 795 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.21■□□□□ 0.99
CACNA1FO60840 AC084121.4-201ENST00000641598 221 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 AF228730.8-201ENST00000642140 221 ntBASIC21.21■□□□□ 0.99
CACNA1FO60840 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CACNA1FO60840 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CACNA1FO60840 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CACNA1FO60840 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.2■□□□□ 0.98
CACNA1FO60840 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.2■□□□□ 0.98
CACNA1FO60840 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CACNA1FO60840 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CACNA1FO60840 TIMM8BP1-201ENST00000452384 211 ntBASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms