Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.15■□□□□ 0.02
SGCEO43556 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.15■□□□□ 0.02
SGCEO43556 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.15■□□□□ 0.02
SGCEO43556 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SGCEO43556 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SGCEO43556 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.15■□□□□ 0.02
SGCEO43556 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.14■□□□□ 0.01
SGCEO43556 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.14■□□□□ 0.01
SGCEO43556 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.14■□□□□ 0.01
SGCEO43556 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.14■□□□□ 0.01
SGCEO43556 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SGCEO43556 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
SGCEO43556 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
SGCEO43556 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 LINC02012-201ENST00000608206 1725 ntBASIC15.14■□□□□ 0.01
SGCEO43556 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SGCEO43556 AC148477.5-201ENST00000625164 1645 ntBASIC15.14■□□□□ 0.01
SGCEO43556 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SGCEO43556 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SGCEO43556 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.13■□□□□ 0.01
SGCEO43556 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.13■□□□□ 0.01
SGCEO43556 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.13■□□□□ 0.01
SGCEO43556 SLC25A1P3-201ENST00000395415 828 ntBASIC15.13■□□□□ 0.01
SGCEO43556 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.13■□□□□ 0.01
SGCEO43556 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.13■□□□□ 0.01
SGCEO43556 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.13■□□□□ 0.01
SGCEO43556 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.13■□□□□ 0.01
SGCEO43556 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.13■□□□□ 0.01
SGCEO43556 AP005117.1-201ENST00000584346 1413 ntBASIC15.13■□□□□ 0.01
SGCEO43556 SIGLEC16-201ENST00000599858 1437 ntBASIC15.13■□□□□ 0.01
SGCEO43556 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 AL732292.2-201ENST00000609649 430 ntBASIC15.13■□□□□ 0.01
SGCEO43556 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 AL136379.1-201ENST00000623471 2642 ntBASIC15.13■□□□□ 0.01
SGCEO43556 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SGCEO43556 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SGCEO43556 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.13■□□□□ 0.01
SGCEO43556 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SGCEO43556 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.12■□□□□ 0.01
SGCEO43556 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.12■□□□□ 0.01
SGCEO43556 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms