Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL022328.1-201ENST00000610050 478 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 NOC2LP1-202ENST00000452600 2235 ntBASIC13.03□□□□□ -0.32
COL6A5A8TX70 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 SDHAP3-202ENST00000515467 728 ntBASIC13.03□□□□□ -0.32
COL6A5A8TX70 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 AL008638.5-201ENST00000623814 1298 ntBASIC13.03□□□□□ -0.32
COL6A5A8TX70 AC138627.1-207ENST00000641560 1006 ntBASIC13.03□□□□□ -0.32
COL6A5A8TX70 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 SERBP1P3-201ENST00000459980 809 ntBASIC13.03□□□□□ -0.32
COL6A5A8TX70 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 AC010328.2-201ENST00000597698 1111 ntBASIC13.03□□□□□ -0.32
COL6A5A8TX70 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.03□□□□□ -0.32
COL6A5A8TX70 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL6A5A8TX70 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.02□□□□□ -0.32
COL6A5A8TX70 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.02□□□□□ -0.32
COL6A5A8TX70 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL6A5A8TX70 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL6A5A8TX70 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 EFTUD1P1-204ENST00000560401 1798 ntBASIC13.02□□□□□ -0.33
COL6A5A8TX70 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 FLJ13224-201ENST00000313737 1514 ntBASIC13.02□□□□□ -0.33
COL6A5A8TX70 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 AL662890.1-201ENST00000396818 632 ntBASIC13.02□□□□□ -0.33
COL6A5A8TX70 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 AC128714.1-201ENST00000637035 887 ntBASIC13.02□□□□□ -0.33
COL6A5A8TX70 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 AC138028.6-201ENST00000616106 1482 ntBASIC13.02□□□□□ -0.33
COL6A5A8TX70 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
COL6A5A8TX70 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL6A5A8TX70 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL6A5A8TX70 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.01□□□□□ -0.33
COL6A5A8TX70 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms