Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.35■□□□□ 0.37
TCRBV7S3A2A0A539 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 TUBB8P12-201ENST00000308911 1335 ntBASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 TUBB7P-202ENST00000428444 1305 ntBASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 TUBB8P7-204ENST00000567960 1332 ntBASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AC026691.1-201ENST00000602502 2017 ntBASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.34■□□□□ 0.37
TCRBV7S3A2A0A539 AL391005.1-201ENST00000623953 2435 ntBASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TCRBV7S3A2A0A539 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 AC132008.2-207ENST00000454517 770 ntBASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 BX005266.1-201ENST00000473402 457 ntBASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 AC138894.3-201ENST00000603787 634 ntBASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 AL591684.3-201ENST00000605187 298 ntBASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TCRBV7S3A2A0A539 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 AP005117.1-201ENST00000584346 1413 ntBASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 AL590787.1-201ENST00000568856 1315 ntBASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms