Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.5■□□□□ 0.87
ZC3H4Q9UPT8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.5■□□□□ 0.87
ZC3H4Q9UPT8 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
ZC3H4Q9UPT8 AC003101.2-201ENST00000612557 442 ntBASIC20.5■□□□□ 0.87
ZC3H4Q9UPT8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZC3H4Q9UPT8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZC3H4Q9UPT8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZC3H4Q9UPT8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AL096828.2-201ENST00000567259 1965 ntBASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AC093004.1-201ENST00000508850 424 ntBASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AP005482.1-201ENST00000563722 1273 ntBASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 AC004840.1-201ENST00000636359 365 ntBASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.48■□□□□ 0.87
ZC3H4Q9UPT8 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 AC135050.7-201ENST00000624508 2218 ntBASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 AL133373.2-201ENST00000623187 2828 ntBASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 AP3S2-216ENST00000617003 1561 ntBASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 PCDHB18P-201ENST00000524813 2368 ntBASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 AL390961.4-201ENST00000623958 2535 ntBASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
ZC3H4Q9UPT8 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.46■□□□□ 0.87
ZC3H4Q9UPT8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms