Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17■□□□□ 0.31
TREX1Q9NSU2 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 AC006504.4-201ENST00000592118 1568 ntBASIC17■□□□□ 0.31
TREX1Q9NSU2 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
TREX1Q9NSU2 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17■□□□□ 0.31
TREX1Q9NSU2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17■□□□□ 0.31
TREX1Q9NSU2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TREX1Q9NSU2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 UBALD1-205ENST00000590891 2641 ntBASIC16.99■□□□□ 0.31
TREX1Q9NSU2 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 KRT18P27-201ENST00000427733 1299 ntBASIC16.99■□□□□ 0.31
TREX1Q9NSU2 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 AC013467.2-201ENST00000605472 835 ntBASIC16.99■□□□□ 0.31
TREX1Q9NSU2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 AL805961.1-202ENST00000641562 540 ntBASIC16.99■□□□□ 0.31
TREX1Q9NSU2 AF228730.7-201ENST00000641842 219 ntBASIC16.99■□□□□ 0.31
TREX1Q9NSU2 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TREX1Q9NSU2 PCDHB19P-201ENST00000570871 2371 ntBASIC16.99■□□□□ 0.31
TREX1Q9NSU2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 DUSP5P1-201ENST00000441325 1139 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 AC087163.2-201ENST00000457299 853 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 AC006557.2-201ENST00000592985 1240 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 REXO1L3P-201ENST00000622202 1288 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 TP73-AS1-207ENST00000624167 988 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.98■□□□□ 0.31
TREX1Q9NSU2 AC138932.1-201ENST00000534164 6830 ntBASIC16.98■□□□□ 0.31
TREX1Q9NSU2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms