Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.98■□□□□ 0.63
VTA1Q9NP79 AP000842.3-202ENST00000569238 1080 ntBASIC18.98■□□□□ 0.63
VTA1Q9NP79 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.98■□□□□ 0.63
VTA1Q9NP79 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.98■□□□□ 0.63
VTA1Q9NP79 AC027307.2-201ENST00000591252 911 ntBASIC18.98■□□□□ 0.63
VTA1Q9NP79 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VTA1Q9NP79 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VTA1Q9NP79 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VTA1Q9NP79 FRMD8P1-201ENST00000440433 1524 ntBASIC18.98■□□□□ 0.63
VTA1Q9NP79 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VTA1Q9NP79 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VTA1Q9NP79 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
VTA1Q9NP79 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VTA1Q9NP79 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 MIR346-201ENST00000362234 95 ntBASIC18.97■□□□□ 0.63
VTA1Q9NP79 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 COX20P2-201ENST00000452636 358 ntBASIC18.97■□□□□ 0.63
VTA1Q9NP79 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 AC140878.1-201ENST00000565277 250 ntBASIC18.97■□□□□ 0.63
VTA1Q9NP79 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 AC008677.1-201ENST00000519230 1561 ntBASIC18.97■□□□□ 0.63
VTA1Q9NP79 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VTA1Q9NP79 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VTA1Q9NP79 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 AC016027.1-202ENST00000607927 1699 ntBASIC18.96■□□□□ 0.63
VTA1Q9NP79 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 INGX-202ENST00000489074 768 ntBASIC18.96■□□□□ 0.63
VTA1Q9NP79 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VTA1Q9NP79 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VTA1Q9NP79 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
VTA1Q9NP79 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.95■□□□□ 0.62
VTA1Q9NP79 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 ALG1L8P-201ENST00000533887 760 ntBASIC18.95■□□□□ 0.62
VTA1Q9NP79 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VTA1Q9NP79 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VTA1Q9NP79 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.94■□□□□ 0.62
VTA1Q9NP79 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VTA1Q9NP79 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms