Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 BX842568.4-201ENST00000421222 227 ntBASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AC009947.1-201ENST00000444350 727 ntBASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AC108751.1-201ENST00000490852 363 ntBASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AC097637.2-201ENST00000624096 1997 ntBASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.54■□□□□ 0.24
CLIP3Q96DZ5 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 AC006504.4-201ENST00000592118 1568 ntBASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CLIP3Q96DZ5 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 ELK2BP-201ENST00000415014 1224 ntBASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.52■□□□□ 0.24
CLIP3Q96DZ5 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP3Q96DZ5 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms