Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
BRF1Q92994 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
BRF1Q92994 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.08■□□□□ 0.81
BRF1Q92994 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.08■□□□□ 0.81
BRF1Q92994 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.08■□□□□ 0.81
BRF1Q92994 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.08■□□□□ 0.81
BRF1Q92994 RPS2P1-201ENST00000434010 821 ntBASIC20.08■□□□□ 0.81
BRF1Q92994 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.08■□□□□ 0.81
BRF1Q92994 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.08■□□□□ 0.81
BRF1Q92994 AC107918.4-202ENST00000641623 219 ntBASIC20.08■□□□□ 0.81
BRF1Q92994 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.08■□□□□ 0.8
BRF1Q92994 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.08■□□□□ 0.8
BRF1Q92994 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
BRF1Q92994 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
BRF1Q92994 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
BRF1Q92994 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
BRF1Q92994 AC006504.4-201ENST00000592118 1568 ntBASIC20.08■□□□□ 0.8
BRF1Q92994 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.08■□□□□ 0.8
BRF1Q92994 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BRF1Q92994 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.07■□□□□ 0.8
BRF1Q92994 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.07■□□□□ 0.8
BRF1Q92994 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
BRF1Q92994 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 AC092171.3-201ENST00000610122 2651 ntBASIC20.07■□□□□ 0.8
BRF1Q92994 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
BRF1Q92994 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
BRF1Q92994 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.07■□□□□ 0.8
BRF1Q92994 ELK2BP-201ENST00000415014 1224 ntBASIC20.07■□□□□ 0.8
BRF1Q92994 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.07■□□□□ 0.8
BRF1Q92994 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.07■□□□□ 0.8
BRF1Q92994 AC079781.3-201ENST00000449110 356 ntBASIC20.07■□□□□ 0.8
BRF1Q92994 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.07■□□□□ 0.8
BRF1Q92994 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.07■□□□□ 0.8
BRF1Q92994 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.07■□□□□ 0.8
BRF1Q92994 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.07■□□□□ 0.8
BRF1Q92994 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.07■□□□□ 0.8
BRF1Q92994 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.07■□□□□ 0.8
BRF1Q92994 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.07■□□□□ 0.8
BRF1Q92994 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.07■□□□□ 0.8
BRF1Q92994 RN7SL510P-201ENST00000581311 263 ntBASIC20.07■□□□□ 0.8
BRF1Q92994 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.07■□□□□ 0.8
BRF1Q92994 TERC-201ENST00000602385 541 ntBASIC20.07■□□□□ 0.8
BRF1Q92994 AL121912.1-201ENST00000603683 238 ntBASIC20.07■□□□□ 0.8
BRF1Q92994 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.07■□□□□ 0.8
BRF1Q92994 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.07■□□□□ 0.8
BRF1Q92994 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRF1Q92994 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.06■□□□□ 0.8
BRF1Q92994 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
BRF1Q92994 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 PTCHD3P3-201ENST00000403073 906 ntBASIC20.06■□□□□ 0.8
BRF1Q92994 LAGE3P1-201ENST00000425356 484 ntBASIC20.06■□□□□ 0.8
BRF1Q92994 AL450487.1-201ENST00000426799 995 ntBASIC20.06■□□□□ 0.8
BRF1Q92994 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 RNPS1P1-201ENST00000507437 918 ntBASIC20.06■□□□□ 0.8
BRF1Q92994 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.06■□□□□ 0.8
BRF1Q92994 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.06■□□□□ 0.8
BRF1Q92994 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms