Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.44■□□□□ 0.54
KRT39Q6A163 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
KRT39Q6A163 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
KRT39Q6A163 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
KRT39Q6A163 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 PI4KAP1-204ENST00000612579 1703 ntBASIC18.43■□□□□ 0.54
KRT39Q6A163 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.43■□□□□ 0.54
KRT39Q6A163 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.43■□□□□ 0.54
KRT39Q6A163 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
KRT39Q6A163 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.43■□□□□ 0.54
KRT39Q6A163 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
KRT39Q6A163 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
KRT39Q6A163 AC105339.3-201ENST00000560043 636 ntBASIC18.43■□□□□ 0.54
KRT39Q6A163 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
KRT39Q6A163 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 FAM215A-202ENST00000632077 792 ntBASIC18.43■□□□□ 0.54
KRT39Q6A163 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.43■□□□□ 0.54
KRT39Q6A163 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.43■□□□□ 0.54
KRT39Q6A163 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
KRT39Q6A163 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
KRT39Q6A163 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
KRT39Q6A163 AL021920.2-201ENST00000624828 1351 ntBASIC18.42■□□□□ 0.54
KRT39Q6A163 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.42■□□□□ 0.54
KRT39Q6A163 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.42■□□□□ 0.54
KRT39Q6A163 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
KRT39Q6A163 NKILA-202ENST00000614771 2598 ntBASIC18.42■□□□□ 0.54
KRT39Q6A163 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
KRT39Q6A163 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.42■□□□□ 0.54
KRT39Q6A163 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
KRT39Q6A163 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.42■□□□□ 0.54
KRT39Q6A163 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
KRT39Q6A163 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.42■□□□□ 0.54
KRT39Q6A163 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
KRT39Q6A163 RPS15P9-201ENST00000494093 319 ntBASIC18.42■□□□□ 0.54
KRT39Q6A163 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.42■□□□□ 0.54
KRT39Q6A163 AC012640.2-201ENST00000561606 901 ntBASIC18.42■□□□□ 0.54
KRT39Q6A163 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 MIR1199-201ENST00000621445 119 ntBASIC18.42■□□□□ 0.54
KRT39Q6A163 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
KRT39Q6A163 PCDHB17P-201ENST00000539533 2393 ntBASIC18.42■□□□□ 0.54
KRT39Q6A163 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
KRT39Q6A163 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.42■□□□□ 0.54
KRT39Q6A163 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
KRT39Q6A163 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.41■□□□□ 0.54
KRT39Q6A163 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
KRT39Q6A163 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.41■□□□□ 0.54
KRT39Q6A163 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 AL356488.2-201ENST00000602755 427 ntBASIC18.41■□□□□ 0.54
KRT39Q6A163 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.41■□□□□ 0.54
KRT39Q6A163 PGM5P2-202ENST00000637225 1043 ntBASIC18.41■□□□□ 0.54
KRT39Q6A163 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.41■□□□□ 0.54
KRT39Q6A163 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.41■□□□□ 0.54
KRT39Q6A163 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.41■□□□□ 0.54
KRT39Q6A163 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
KRT39Q6A163 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
KRT39Q6A163 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms