Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 TOB2P1-201ENST00000469761 992 ntBASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 AC104819.1-201ENST00000504587 486 ntBASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 AC093909.1-201ENST00000504731 1122 ntBASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 AC073648.2-201ENST00000510116 352 ntBASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDLIM3Q53GG5 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 KRT8P47-201ENST00000604727 1398 ntBASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 RPS8P6-201ENST00000426177 609 ntBASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 SAPCD2P3-201ENST00000455031 850 ntBASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms