Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 AC105020.1-201ENST00000435356 2205 ntBASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 KLF4P1-201ENST00000412782 1185 ntBASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 AC005829.1-201ENST00000570002 483 ntBASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC144BQ3MJ40 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC144BQ3MJ40 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AP006288.1-201ENST00000446065 395 ntBASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 MIR4751-201ENST00000578027 74 ntBASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AC019129.2-201ENST00000609837 1235 ntBASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 AC002310.6-201ENST00000624451 1377 ntBASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 LINC00304-203ENST00000565008 1864 ntBASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 CICP6-201ENST00000457191 2729 ntBASIC19.82■□□□□ 0.76
CCDC144BQ3MJ40 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 VN2R19P-201ENST00000442399 1052 ntBASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 SIGLEC30P-201ENST00000455569 941 ntBASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 AC008667.4-201ENST00000607370 168 ntBASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 AL596442.2-201ENST00000610240 980 ntBASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC144BQ3MJ40 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms