Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MIR5189-201ENST00000577370 114 ntBASIC10.4□□□□□ -0.75
HSPG2P98160 RN7SL219P-201ENST00000582872 296 ntBASIC10.4□□□□□ -0.75
HSPG2P98160 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC10.4□□□□□ -0.75
HSPG2P98160 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC10.4□□□□□ -0.75
HSPG2P98160 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC10.4□□□□□ -0.75
HSPG2P98160 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
HSPG2P98160 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC10.39□□□□□ -0.75
HSPG2P98160 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 SLC25A47P1-201ENST00000531577 414 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 AC128714.1-201ENST00000637035 887 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
HSPG2P98160 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
HSPG2P98160 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 CALR4P-201ENST00000431943 946 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC10.39□□□□□ -0.75
HSPG2P98160 AC006033.1-201ENST00000440505 426 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC10.39□□□□□ -0.75
HSPG2P98160 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 TPRX2P-201ENST00000535362 881 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
HSPG2P98160 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
HSPG2P98160 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC10.39□□□□□ -0.75
HSPG2P98160 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC10.39□□□□□ -0.75
HSPG2P98160 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 AC079328.1-201ENST00000560358 952 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 DERL2-202ENST00000570848 657 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 AC233724.13-201ENST00000598383 410 ntBASIC10.39□□□□□ -0.75
HSPG2P98160 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC10.39□□□□□ -0.75
HSPG2P98160 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC10.39□□□□□ -0.75
HSPG2P98160 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
HSPG2P98160 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
HSPG2P98160 AC026740.1-201ENST00000607068 791 ntBASIC10.38□□□□□ -0.75
HSPG2P98160 AC009542.2-202ENST00000619004 1067 ntBASIC10.38□□□□□ -0.75
HSPG2P98160 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 PP14571-201ENST00000404327 934 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC10.38□□□□□ -0.75
HSPG2P98160 RIT1-205ENST00000539040 919 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC10.38□□□□□ -0.75
HSPG2P98160 AC020765.3-201ENST00000613051 740 ntBASIC10.38□□□□□ -0.75
HSPG2P98160 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC10.38□□□□□ -0.75
HSPG2P98160 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC10.38□□□□□ -0.75
HSPG2P98160 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
HSPG2P98160 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC10.38□□□□□ -0.75
HSPG2P98160 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
HSPG2P98160 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
HSPG2P98160 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms