Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.8■□□□□ 0.12
RNF4P78317 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.8■□□□□ 0.12
RNF4P78317 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
RNF4P78317 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.8■□□□□ 0.12
RNF4P78317 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
RNF4P78317 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 FRMD8P1-201ENST00000440433 1524 ntBASIC15.79■□□□□ 0.12
RNF4P78317 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF4P78317 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
RNF4P78317 AC002310.6-201ENST00000624451 1377 ntBASIC15.79■□□□□ 0.12
RNF4P78317 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
RNF4P78317 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.79■□□□□ 0.12
RNF4P78317 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 KRT18P2-201ENST00000447938 1258 ntBASIC15.79■□□□□ 0.12
RNF4P78317 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
RNF4P78317 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF4P78317 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.79■□□□□ 0.12
RNF4P78317 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.79■□□□□ 0.12
RNF4P78317 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF4P78317 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.79■□□□□ 0.12
RNF4P78317 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF4P78317 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF4P78317 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
RNF4P78317 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF4P78317 AL645608.8-201ENST00000606034 2086 ntBASIC15.79■□□□□ 0.12
RNF4P78317 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF4P78317 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 AC129492.6-201ENST00000611383 1305 ntBASIC15.78■□□□□ 0.12
RNF4P78317 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
RNF4P78317 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF4P78317 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.78■□□□□ 0.12
RNF4P78317 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF4P78317 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 IGLL3P-201ENST00000412472 434 ntBASIC15.78■□□□□ 0.12
RNF4P78317 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF4P78317 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF4P78317 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms