Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CXCL12P48061 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.85■□□□□ 0.29
CXCL12P48061 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL12P48061 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CXCL12P48061 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CXCL12P48061 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.85■□□□□ 0.29
CXCL12P48061 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.85■□□□□ 0.29
CXCL12P48061 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL12P48061 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL12P48061 IGHV3-71-201ENST00000523324 359 ntBASIC16.85■□□□□ 0.29
CXCL12P48061 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.85■□□□□ 0.29
CXCL12P48061 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.85■□□□□ 0.29
CXCL12P48061 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.85■□□□□ 0.29
CXCL12P48061 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CXCL12P48061 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL12P48061 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CXCL12P48061 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 AC007541.1-201ENST00000570282 1469 ntBASIC16.85■□□□□ 0.29
CXCL12P48061 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
CXCL12P48061 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL12P48061 AP000974.1-201ENST00000623909 2387 ntBASIC16.85■□□□□ 0.29
CXCL12P48061 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL12P48061 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL12P48061 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.84■□□□□ 0.29
CXCL12P48061 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.84■□□□□ 0.29
CXCL12P48061 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 LINC00304-203ENST00000565008 1864 ntBASIC16.84■□□□□ 0.29
CXCL12P48061 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CXCL12P48061 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CXCL12P48061 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 AL353779.1-201ENST00000434793 351 ntBASIC16.84■□□□□ 0.29
CXCL12P48061 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.84■□□□□ 0.29
CXCL12P48061 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.84■□□□□ 0.29
CXCL12P48061 AC021097.1-201ENST00000607902 574 ntBASIC16.84■□□□□ 0.29
CXCL12P48061 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.84■□□□□ 0.29
CXCL12P48061 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 AL035456.1-201ENST00000456064 1369 ntBASIC16.84■□□□□ 0.29
CXCL12P48061 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
CXCL12P48061 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CXCL12P48061 AC131009.4-201ENST00000624048 1740 ntBASIC16.84■□□□□ 0.29
CXCL12P48061 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CXCL12P48061 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL12P48061 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CXCL12P48061 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CXCL12P48061 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.83■□□□□ 0.29
CXCL12P48061 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CXCL12P48061 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 AC098614.1-201ENST00000368528 745 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
CXCL12P48061 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.83■□□□□ 0.28
CXCL12P48061 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.83■□□□□ 0.28
CXCL12P48061 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.83■□□□□ 0.28
CXCL12P48061 U91328.1-201ENST00000437528 223 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.83■□□□□ 0.28
CXCL12P48061 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.83■□□□□ 0.28
CXCL12P48061 AC009477.1-201ENST00000452936 217 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms