Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RORAP35398 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
RORAP35398 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RORAP35398 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
RORAP35398 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.22■□□□□ 0.19
RORAP35398 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.22■□□□□ 0.19
RORAP35398 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 HTR5BP-201ENST00000430851 1154 ntBASIC16.22■□□□□ 0.19
RORAP35398 DNAJB3-202ENST00000449667 1266 ntBASIC16.22■□□□□ 0.19
RORAP35398 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.22■□□□□ 0.19
RORAP35398 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 MIR4469-201ENST00000583919 79 ntBASIC16.22■□□□□ 0.19
RORAP35398 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.22■□□□□ 0.19
RORAP35398 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RORAP35398 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RORAP35398 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RORAP35398 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 AC025580.3-201ENST00000617932 1424 ntBASIC16.21■□□□□ 0.19
RORAP35398 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.21■□□□□ 0.19
RORAP35398 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.21■□□□□ 0.19
RORAP35398 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.21■□□□□ 0.19
RORAP35398 FAM185BP-201ENST00000443595 716 ntBASIC16.21■□□□□ 0.19
RORAP35398 AC087163.2-201ENST00000457299 853 ntBASIC16.21■□□□□ 0.19
RORAP35398 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.21■□□□□ 0.19
RORAP35398 SLC25A6P2-201ENST00000497974 877 ntBASIC16.21■□□□□ 0.19
RORAP35398 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.21■□□□□ 0.19
RORAP35398 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.21■□□□□ 0.19
RORAP35398 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.21■□□□□ 0.19
RORAP35398 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.21■□□□□ 0.19
RORAP35398 AC023141.13-201ENST00000604991 943 ntBASIC16.21■□□□□ 0.19
RORAP35398 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.21■□□□□ 0.19
RORAP35398 AL078644.1-201ENST00000609881 752 ntBASIC16.21■□□□□ 0.19
RORAP35398 AC007064.4-201ENST00000637740 555 ntBASIC16.21■□□□□ 0.19
RORAP35398 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RORAP35398 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RORAP35398 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RORAP35398 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
RORAP35398 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RORAP35398 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
RORAP35398 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RORAP35398 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RORAP35398 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.2■□□□□ 0.18
RORAP35398 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.2■□□□□ 0.18
RORAP35398 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RORAP35398 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RORAP35398 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RORAP35398 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
RORAP35398 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.2■□□□□ 0.18
RORAP35398 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.2■□□□□ 0.18
RORAP35398 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.2■□□□□ 0.18
RORAP35398 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.2■□□□□ 0.18
RORAP35398 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.2■□□□□ 0.18
RORAP35398 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.2■□□□□ 0.18
RORAP35398 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
RORAP35398 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.2■□□□□ 0.18
RORAP35398 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.2■□□□□ 0.18
RORAP35398 ACTL9-202ENST00000612068 1252 ntBASIC16.2■□□□□ 0.18
RORAP35398 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RORAP35398 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms